Non-Covalent Binding Assays
Discover and characterize non-covalent leads with affinity selection mass spectrometry (ASMS)
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Benefits of ASMS for Non-Covalent Lead Discovery
High Throughput
100K compounds in pools of 320 screened in 38 hours
Minimal Assay Development Required
Ideal platform for selectivity screening
Native Context
Solution-phase binding eliminates the need to tag or immobilize targets
Diverse Compatibility
Works well with protein/protein and protein/oligo complexes, including large targets that can be challenging for SPR or interferometry
Low Input
Primary screening of 100K compounds requires <1mg of 50 kD target
Broad Chemical Space Coverage
Positive ion ESI-MS covers ~95% of drug-like test compounds
Overview
Non-Covalent Binding Assays

01.
Target and Test Compound Incubation
Protein or RNA mixed with pools of hundreds of test compounds

02.
Size exclusion chromatography
Separation of bound complexes from unbound test compounds

03.
Reverse Phase Chromatography
Bound compounds are dissociated and separated

04.
Time-of-Flight MS & Custom Report Generation
Compounds are identified and quantified to generate a compound-specific hit list
Frequently Asked Questions
We perform ASMS screening using the Automated Ligand Identification System (ALIS) on an Agilent 2D-HPLC system interfaced to an Agilent Time-of-Flight MS.
ASMS offers a variety of advantages compared to DEL screening. ASMS eliminates the need for labels, tags, or other modifications on both test compounds and targets, meaning that binding occurs in a native context. ASMS can readily screen protein complexes and other challenging targets, and compound libraries are comprised of Rule-of-Five-compliant drug-like molecules. All hits are available for immediate validation and follow-up, while DEL hits must be resynthesized and purified for orthogonal confirmation. ASMS is quantitative (peak areas are proportional to target occupancy), enabling hit triage and determination of relative selectivity.
We have extensive experience using ASMS screens to study hundreds of targets tested against tens of millions of compounds. We can screen our in-house library of 400K compounds, as well as third-party libraries, and internal client libraries. While we typically screen Rule of Five compliant chemical libraries, we can also screen macrocycles. We offer target QC on proteins and RNA to ensure accurate screens.
We recommend clients run a secondary screen to confirm hits in small pools of one to five compounds. We can also rank order hits by competitive binding, give quantitative information on target occupancy, and determine binding affinity for Structure-Activity Relationship (SAR) studies.
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