Non-Covalent Binding Assays

Discover and characterize non-covalent leads with affinity selection mass spectrometry (ASMS)

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Benefits of ASMS for Non-Covalent Lead Discovery

High Throughput

100K compounds in pools of 320 screened in 38 hours

Minimal Assay Development Required

Ideal platform for selectivity screening

Native Context

Solution-phase binding eliminates the need to tag or immobilize targets

Diverse Compatibility

Works well with protein/protein and protein/oligo complexes, including large targets that can be challenging for SPR or interferometry

Low Input

Primary screening of 100K compounds requires <1mg of 50 kD target

Broad Chemical Space Coverage

Positive ion ESI-MS covers ~95% of drug-like test compounds

Overview

Non-Covalent Binding Assays

Target and Test Compound Incubation

01.

Target and Test Compound Incubation

Protein or RNA mixed with pools of hundreds of test compounds

Size exclusion chromatography

02.

Size exclusion chromatography

Separation of bound complexes from unbound test compounds

Reverse Phase Chromatography

03.

Reverse Phase Chromatography

Bound compounds are dissociated and separated

Time-of-Flight MS & Custom Report Generation

04.

Time-of-Flight MS & Custom Report Generation

Compounds are identified and quantified to generate a compound-specific hit list

Frequently Asked Questions

What platform is used for ASMS?

We perform ASMS screening using the Automated Ligand Identification System (ALIS) on an Agilent 2D-HPLC system interfaced to an Agilent Time-of-Flight MS.

How does ASMS compare to DEL screening?

ASMS offers a variety of advantages compared to DEL screening. ASMS eliminates the need for labels, tags, or other modifications on both test compounds and targets, meaning that binding occurs in a native context. ASMS can readily screen protein complexes and other challenging targets, and compound libraries are comprised of Rule-of-Five-compliant drug-like molecules. All hits are available for immediate validation and follow-up, while DEL hits must be resynthesized and purified for orthogonal confirmation. ASMS is quantitative (peak areas are proportional to target occupancy), enabling hit triage and determination of relative selectivity.

What libraries can be screened with ASMS?

We have extensive experience using ASMS screens to study hundreds of targets tested against tens of millions of compounds. We can screen our in-house library of 400K compounds, as well as third-party libraries, and internal client libraries. While we typically screen Rule of Five compliant chemical libraries, we can also screen macrocycles. We offer target QC on proteins and RNA to ensure accurate screens.

What happens after primary hits are identified?

We recommend clients run a secondary screen to confirm hits in small pools of one to five compounds. We can also rank order hits by competitive binding, give quantitative information on target occupancy, and determine binding affinity for Structure-Activity Relationship (SAR) studies.

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Download our digital brochure

Learn more about Momentum's mass spectrometry-driven drug discovery services in our digital brochure.
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